DisGeNET - a database of gene-disease associations

List of associated variants

Tuberculosis, C0041296

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs958617		1.000	0.040	4	77684215	intergenic variant	A/G	snv		0.56	1
rs956730	IL1R1	0.925	0.120	2	102141656	intron variant	G/A	snv		0.42	2
rs9420907	STN1	0.790	0.320	10	103916707	intron variant	C/A;G	snv			7
rs9376269	IFNGR1	1.000	0.040	6	137218368	intron variant	C/G	snv		0.22	1
rs9376268	IFNGR1	0.925	0.080	6	137211614	intron variant	G/A	snv		0.20	2
rs9376267	IFNGR1	0.925	0.080	6	137209894	5 prime UTR variant	C/T	snv		0.22	2
rs9373523	STXBP5	1.000	0.040	6	147379997	intron variant	T/G	snv		0.62	2
rs937337	PTGER2	1.000	0.040	14	52322041	intron variant	G/A;C	snv		0.93	1
rs932347		1.000	0.040	1	209882285	intergenic variant	C/T	snv		0.15	1
rs931924	LINC02211	1.000	0.040	5	25321925	intron variant	C/T	snv		0.70	1
rs9298814	IFNA17	0.790	0.160	9	21227623	missense variant	A/C;G	snv	0.12; 8.8E-06		7
rs9272785	LOC107986589 ; HLA-DQA1 ; HLA-DQA2	0.882	0.080	6	32642624	missense variant	G/A	snv	0.18	8.7E-02	3
rs9268494	BTNL2 ; TSBP1-AS1	0.882	0.200	6	32407575	non coding transcript exon variant	A/C;T	snv		0.32	3
rs9268492	BTNL2 ; TSBP1-AS1	0.882	0.200	6	32407503	non coding transcript exon variant	C/G	snv		0.31	3
rs925994	IRF8	0.925	0.080	16	85912411	intron variant	C/A	snv		6.7E-02	2
rs9061	SP110 ; SP140	0.925	0.080	2	230212395	missense variant	C/T	snv	0.11	9.1E-02	2
rs865901367	GRAP2	1.000	0.040	22	39968124	missense variant	C/T	snv		2.1E-05	1
rs8177400	TIRAP	0.882	0.160	11	126292695	missense variant	G/A;C;T	snv	2.8E-03; 1.2E-05		4
rs8177374	TIRAP	0.672	0.520	11	126292948	missense variant	C/T	snv	0.12	0.11	22
rs8105767	LOC112268248	0.882	0.120	19	22032639	non coding transcript exon variant	A/G	snv		0.35	3
rs809451	MAPKAPK3 ; CISH	1.000	0.040	3	50613461	intron variant	G/A;C	snv			1
rs8087945		1.000	0.040	18	22596123	intergenic variant	A/G	snv		0.61	1
rs8073782		0.925	0.040	17	27807685	intron variant	C/T	snv		0.27	2
rs8064821	SOCS3 ; LOC101928674	0.851	0.120	17	78361310	intron variant	C/A	snv		0.17	6